HL_3J81_016

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCCUUGUGGG

Length

10 nucleotides

Bulged bases

3J81|1|2|U|719, 3J81|1|2|U|721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|U|715
3J81|1|2|C|716
3J81|1|2|C|717
3J81|1|2|U|718
3J81|1|2|U|719
3J81|1|2|G|720
3J81|1|2|U|721
3J81|1|2|G|722
3J81|1|2|G|723
3J81|1|2|G|724

Current chains

Chain 2

18S rRNA

Nearby chains