HL_3J81_017

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

3J81|1|2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J81_017 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2283

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

3J81|1|2|U|764
3J81|1|2|G|765
3J81|1|2|U|766
3J81|1|2|U|767
3J81|1|2|C|768
3J81|1|2|A|769
3J81|1|2|A|770
3J81|1|2|A|771
3J81|1|2|G|772

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain Y

eS24