HL_3J81_033

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUGUAAUUAUUG

Length

14 nucleotides

Bulged bases

3J81|1|2|A|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|C|1547
3J81|1|2|A|1548
3J81|1|2|U|1549
3J81|1|2|U|1550
3J81|1|2|G|1551
3J81|1|2|U|1552
3J81|1|2|A|1553
3J81|1|2|A|1554
3J81|1|2|U|1555
3J81|1|2|U|1556
3J81|1|2|A|1557
3J81|1|2|U|1558
3J81|1|2|U|1559
3J81|1|2|G|1560

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain S

uS13

Chain T

eS19

Chain d

uS14