HL_3J81_043

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUAAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUU

Length

36 nucleotides

Bulged bases

3J81|1|2|G|1227, 3J81|1|2|G|1242, 3J81|1|2|U|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|A|1223
3J81|1|2|U|1224
3J81|1|2|A|1225
3J81|1|2|A|1226
3J81|1|2|G|1227
3J81|1|2|G|1228
3J81|1|2|A|1229
3J81|1|2|U|1230
3J81|1|2|U|1231
3J81|1|2|G|1232
3J81|1|2|A|1233
3J81|1|2|C|1234
3J81|1|2|A|1235
3J81|1|2|G|1236
3J81|1|2|A|1237
3J81|1|2|U|1238
3J81|1|2|U|1239
3J81|1|2|G|1240
3J81|1|2|A|1241
3J81|1|2|G|1242
3J81|1|2|A|1243
3J81|1|2|G|1244
3J81|1|2|C|1245
3J81|1|2|U|1246
3J81|1|2|C|1247
3J81|1|2|U|1248
3J81|1|2|U|1249
3J81|1|2|U|1250
3J81|1|2|C|1251
3J81|1|2|U|1252
3J81|1|2|U|1253
3J81|1|2|G|1254
3J81|1|2|A|1255
3J81|1|2|U|1256
3J81|1|2|U|1257
3J81|1|2|U|1258

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

eS10

Chain M

eS12

Chain P

uS19

Chain d

uS14

Chain f

eS31