HL_3J9Y_033

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

3J9Y|1|A|U|1396, 3J9Y|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_033 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1019

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3J9Y|1|A|G|1389
3J9Y|1|A|U|1390
3J9Y|1|A|U|1391
3J9Y|1|A|A|1392
3J9Y|1|A|A|1393
3J9Y|1|A|U|1394
3J9Y|1|A|A|1395
3J9Y|1|A|U|1396
3J9Y|1|A|U|1397
3J9Y|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23