HL_3J9Y_034

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

3J9Y|1|A|A|1453, 3J9Y|1|A|C|1454, 3J9Y|1|A|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_034 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.1887

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

3J9Y|1|A|G|1450
3J9Y|1|A|C|1451
3J9Y|1|A|G|1452
3J9Y|1|A|A|1453
3J9Y|1|A|C|1454
3J9Y|1|A|G|1455
3J9Y|1|A|G|1456
3J9Y|1|A|U|1457
3J9Y|1|A|U|1458
3J9Y|1|A|G|1459
3J9Y|1|A|U|1460
3J9Y|1|A|C|1461

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17