HL_3J9Y_035

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

3J9Y|1|A|C|1493, 3J9Y|1|A|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_035 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.0887

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

3J9Y|1|A|G|1492
3J9Y|1|A|C|1493
3J9Y|1|A|A|1494
3J9Y|1|A|A|1495
3J9Y|1|A|A|1496
3J9Y|1|A|U|1497
3J9Y|1|A|C|1498

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2