HL_3J9Y_038

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

3J9Y|1|A|A|1614, 3J9Y|1|A|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_038 not in the Motif Atlas

Homologous match to HL_9DFE_038

Geometric discrepancy: 0.1

The information below is about HL_9DFE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3J9Y|1|A|C|1612
3J9Y|1|A|G|1613
3J9Y|1|A|A|1614
3J9Y|1|A|C|1615
3J9Y|1|A|A|1616
3J9Y|1|A|C|1617
3J9Y|1|A|6MZ|1618
3J9Y|1|A|G|1619

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain S

50S ribosomal protein L22