HL_3J9Y_065

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

3J9Y|1|A|U|2797, 3J9Y|1|A|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_065 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.4697

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3J9Y|1|A|C|2795
3J9Y|1|A|U|2796
3J9Y|1|A|U|2797
3J9Y|1|A|U|2798
3J9Y|1|A|A|2799
3J9Y|1|A|A|2800
3J9Y|1|A|G|2801

Current chains

Chain A

23S ribosomal RNA

Nearby chains