HL_3J9Y_071

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAAGCUUGCUUCU

Length

14 nucleotides

Bulged bases

3J9Y|1|a|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_071 not in the Motif Atlas

Homologous match to HL_6CZR_073

Geometric discrepancy: 0.5239

The information below is about HL_6CZR_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9Y|1|a|A|78
3J9Y|1|a|G|79
3J9Y|1|a|A|80
3J9Y|1|a|A|81
3J9Y|1|a|G|82
3J9Y|1|a|C|83
3J9Y|1|a|U|84
3J9Y|1|a|U|85
3J9Y|1|a|G|86
3J9Y|1|a|C|87
3J9Y|1|a|U|88
3J9Y|1|a|U|89
3J9Y|1|a|C|90
3J9Y|1|a|U|91

Current chains

Chain a

16S ribosomal RNA

Nearby chains