HL_3J9Y_080

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3J9Y|1|a|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_080 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1936

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3J9Y|1|a|C|419
3J9Y|1|a|U|420
3J9Y|1|a|U|421
3J9Y|1|a|C|422
3J9Y|1|a|G|423
3J9Y|1|a|G|424

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain d

30S ribosomal protein S4