HL_3J9Y_101
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 3J9Y|1|v|G|18, 3J9Y|1|v|G|19
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J9Y_101 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.0941
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
3J9Y|1|v|C|13
3J9Y|1|v|A|14
3J9Y|1|v|G|15
3J9Y|1|v|C|16
3J9Y|1|v|C|17
3J9Y|1|v|U|17|||A
3J9Y|1|v|G|18
3J9Y|1|v|G|19
3J9Y|1|v|H2U|20
3J9Y|1|v|A|21
3J9Y|1|v|G|22
Current chains
- Chain v
- P-site fMet-tRNAfMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
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