HL_3J9Y_107

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

3J9Y|1|A|U|1729, 3J9Y|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Y_107 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.316

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3J9Y|1|A|C|1727
3J9Y|1|A|C|1728
3J9Y|1|A|U|1729
3J9Y|1|A|C|1730
3J9Y|1|A|G|1731
3J9Y|1|A|C|1732
3J9Y|1|A|G|1733

Current chains

Chain A

23S ribosomal RNA

Nearby chains