HL_3JAG_030

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

3JAG|1|5|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_030 not in the Motif Atlas

Geometric match to HL_3RG5_007

Geometric discrepancy: 0.2926

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3JAG|1|5|C|1763
3JAG|1|5|G|1764
3JAG|1|5|A|1765
3JAG|1|5|A|1766
3JAG|1|5|A|1767
3JAG|1|5|C|1768
3JAG|1|5|G|1769

Current chains

Chain 5

28S ribosomal RNA

Nearby chains