HL_3JAG_042

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

3JAG|1|5|U|2530, 3JAG|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_042 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1172

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAG|1|5|G|2523
3JAG|1|5|U|2524
3JAG|1|5|U|2525
3JAG|1|5|C|2526
3JAG|1|5|A|2527
3JAG|1|5|G|2528
3JAG|1|5|A|2529
3JAG|1|5|U|2530
3JAG|1|5|C|2531
3JAG|1|5|C|2532

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34