HL_3JAG_048

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

3JAG|1|5|C|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_048 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.1292

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

3JAG|1|5|C|2738
3JAG|1|5|C|2739
3JAG|1|5|U|2740
3JAG|1|5|U|2741
3JAG|1|5|G|2742

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain p

eL43