HL_3JAG_058

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

3JAG|1|5|A|3876, 3JAG|1|5|A|3877, 3JAG|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_058 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0599

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAG|1|5|G|3873
3JAG|1|5|G|3874
3JAG|1|5|G|3875
3JAG|1|5|A|3876
3JAG|1|5|A|3877
3JAG|1|5|C|3878
3JAG|1|5|G|3879
3JAG|1|5|G|3880
3JAG|1|5|G|3881
3JAG|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain e

eL32