HL_3JAG_101

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

3JAG|1|9|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_101 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1349

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

3JAG|1|9|U|820
3JAG|1|9|G|821
3JAG|1|9|U|822
3JAG|1|9|U|823
3JAG|1|9|C|824
3JAG|1|9|A|825
3JAG|1|9|A|826
3JAG|1|9|A|827
3JAG|1|9|G|828

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24