HL_3JAG_102

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

3JAG|1|9|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_102 not in the Motif Atlas

Homologous match to HL_9H3G_092

Geometric discrepancy: 0.4963

The information below is about HL_9H3G_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

3JAG|1|9|C|833
3JAG|1|9|C|834
3JAG|1|9|C|835
3JAG|1|9|G|836
3JAG|1|9|A|837
3JAG|1|9|G|838
3JAG|1|9|C|839
3JAG|1|9|C|840
3JAG|1|9|G|841

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain YY

eS24