HL_3JAH_072

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAH_072 not in the Motif Atlas

Homologous match to HL_8C3A_065

Geometric discrepancy: 0.0896

The information below is about HL_8C3A_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JAH|1|5|C|4540
3JAH|1|5|G|4541
3JAH|1|5|U|4542
3JAH|1|5|G|4543
3JAH|1|5|A|4544
3JAH|1|5|G|4545

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain A

uL2