HL_3JAI_011

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

3JAI|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_011 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2929

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

3JAI|1|5|U|204
3JAI|1|5|C|205
3JAI|1|5|U|206
3JAI|1|5|G|207
3JAI|1|5|A|208
3JAI|1|5|U|209
3JAI|1|5|C|210
3JAI|1|5|G|211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Y

uL24

Chain e

eL32