HL_3JAI_025

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

3JAI|1|5|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_025 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3086

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

3JAI|1|5|G|1479
3JAI|1|5|C|1480
3JAI|1|5|C|1481
3JAI|1|5|G|1482
3JAI|1|5|C|1483
3JAI|1|5|G|1484
3JAI|1|5|C|1485
3JAI|1|5|C|1486

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

eL13

Chain i

eL36