HL_3JAI_054

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

3JAI|1|5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_054 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.2174

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JAI|1|5|C|3668
3JAI|1|5|G|3669
3JAI|1|5|C|3670
3JAI|1|5|G|3671
3JAI|1|5|G|3672
3JAI|1|5|C|3673
3JAI|1|5|G|3674

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain G

eL8

Chain N

eL15