3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CGCGGCG
Length
7 nucleotides
Bulged bases
3JAI|1|5|C|3673
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_054 not in the Motif Atlas
Homologous match to HL_8C3A_047
Geometric discrepancy: 0.2174
The information below is about HL_8C3A_047
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

3JAI|1|5|C|3668
3JAI|1|5|G|3669
3JAI|1|5|C|3670
3JAI|1|5|G|3671
3JAI|1|5|G|3672
3JAI|1|5|C|3673
3JAI|1|5|G|3674

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
uL2
Chain G
eL8
Chain N
eL15

Coloring options:


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