HL_3JAI_058

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

3JAI|1|5|A|3876, 3JAI|1|5|A|3877, 3JAI|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_058 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0853

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAI|1|5|G|3873
3JAI|1|5|G|3874
3JAI|1|5|G|3875
3JAI|1|5|A|3876
3JAI|1|5|A|3877
3JAI|1|5|C|3878
3JAI|1|5|G|3879
3JAI|1|5|G|3880
3JAI|1|5|G|3881
3JAI|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain e

eL32