3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GGGAACGGGC
Length
10 nucleotides
Bulged bases
3JAI|1|5|A|3876, 3JAI|1|5|A|3877, 3JAI|1|5|C|3878
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_058 not in the Motif Atlas
Homologous match to HL_8C3A_051
Geometric discrepancy: 0.0853
The information below is about HL_8C3A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_90642.8
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
7

Unit IDs

3JAI|1|5|G|3873
3JAI|1|5|G|3874
3JAI|1|5|G|3875
3JAI|1|5|A|3876
3JAI|1|5|A|3877
3JAI|1|5|C|3878
3JAI|1|5|G|3879
3JAI|1|5|G|3880
3JAI|1|5|G|3881
3JAI|1|5|C|3882

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain e
eL32

Coloring options:


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