HL_3JAI_062

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

3JAI|1|5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_062 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1187

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

3JAI|1|5|C|4193
3JAI|1|5|U|4194
3JAI|1|5|G|4195
3JAI|1|5|G|4196
3JAI|1|5|G|4197
3JAI|1|5|G|4198
3JAI|1|5|C|4199
3JAI|1|5|G|4200
3JAI|1|5|G|4201

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain I

uL16

Chain b

eL29