HL_3JAI_064

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_064 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.131

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

3JAI|1|5|G|4250
3JAI|1|5|A|4251
3JAI|1|5|C|4252
3JAI|1|5|A|4253
3JAI|1|5|G|4254
3JAI|1|5|A|4255
3JAI|1|5|A|4256
3JAI|1|5|A|4257
3JAI|1|5|C|4258

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain J

uL5