3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UUGUUCA
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_071 not in the Motif Atlas
Geometric match to HL_5TBW_063
Geometric discrepancy: 0.1112
The information below is about HL_5TBW_063
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_36430.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

3JAI|1|5|U|4497
3JAI|1|5|U|4498
3JAI|1|5|G|4499
3JAI|1|5|U|4500
3JAI|1|5|U|4501
3JAI|1|5|C|4502
3JAI|1|5|A|4503

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain ii
eRF1

Coloring options:


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