3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
3JAI|1|5|G|4694, 3JAI|1|5|C|4698
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_075 not in the Motif Atlas
Homologous match to HL_8C3A_068
Geometric discrepancy: 0.0869
The information below is about HL_8C3A_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

3JAI|1|5|C|4688
3JAI|1|5|U|4689
3JAI|1|5|G|4690
3JAI|1|5|A|4691
3JAI|1|5|A|4692
3JAI|1|5|C|4693
3JAI|1|5|G|4694
3JAI|1|5|C|4695
3JAI|1|5|C|4696
3JAI|1|5|U|4697
3JAI|1|5|C|4698
3JAI|1|5|U|4699
3JAI|1|5|A|4700
3JAI|1|5|A|4701
3JAI|1|5|G|4702

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain H
uL6
Chain O
uL13
Chain m
eL40

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2903 s