HL_3JAI_075

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

3JAI|1|5|G|4694, 3JAI|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_075 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0869

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3JAI|1|5|C|4688
3JAI|1|5|U|4689
3JAI|1|5|G|4690
3JAI|1|5|A|4691
3JAI|1|5|A|4692
3JAI|1|5|C|4693
3JAI|1|5|G|4694
3JAI|1|5|C|4695
3JAI|1|5|C|4696
3JAI|1|5|U|4697
3JAI|1|5|C|4698
3JAI|1|5|U|4699
3JAI|1|5|A|4700
3JAI|1|5|A|4701
3JAI|1|5|G|4702

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40