HL_3JAI_076

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

3JAI|1|5|G|4910, 3JAI|1|5|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_076 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1373

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

3JAI|1|5|G|4907
3JAI|1|5|G|4908
3JAI|1|5|A|4909
3JAI|1|5|G|4910
3JAI|1|5|A|4911
3JAI|1|5|G|4912
3JAI|1|5|G|4913
3JAI|1|5|C|4914

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13