HL_3JAI_097

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_097 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1551

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3JAI|1|9|A|569
3JAI|1|9|C|570
3JAI|1|9|U|571
3JAI|1|9|U|572
3JAI|1|9|U|573
3JAI|1|9|A|574
3JAI|1|9|A|575
3JAI|1|9|A|576
3JAI|1|9|U|577
3JAI|1|9|C|578
3JAI|1|9|C|579
3JAI|1|9|U|580
3JAI|1|9|U|581

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain YY

eS24