3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
GGCGUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_099 not in the Motif Atlas
Geometric match to HL_1KH6_003
Geometric discrepancy: 0.2801
The information below is about HL_1KH6_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_27483.1
Basepair signature
cWW-F
Number of instances in this motif group
2

Unit IDs

3JAI|1|9|G|697
3JAI|1|9|G|698
3JAI|1|9|C|730
3JAI|1|9|G|731
3JAI|1|9|U|732
3JAI|1|9|C|733

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain HH
eS7
Chain WW
uS8

Coloring options:


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