3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CCCGAGCCG
Length
9 nucleotides
Bulged bases
3JAI|1|9|G|836
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_102 not in the Motif Atlas
Homologous match to HL_8P9A_207
Geometric discrepancy: 0.5847
The information below is about HL_8P9A_207
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48417.5
Basepair signature
cWW-F-F
Number of instances in this motif group
26

Unit IDs

3JAI|1|9|C|833
3JAI|1|9|C|834
3JAI|1|9|C|835
3JAI|1|9|G|836
3JAI|1|9|A|837
3JAI|1|9|G|838
3JAI|1|9|C|839
3JAI|1|9|C|840
3JAI|1|9|G|841

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain EE
eS4
Chain YY
eS24

Coloring options:


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