HL_3JAJ_016
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 3JAJ|1|5|G|315, 3JAJ|1|5|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAJ_016 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.2578
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
3JAJ|1|5|G|314
3JAJ|1|5|G|315
3JAJ|1|5|U|316
3JAJ|1|5|A|317
3JAJ|1|5|A|318
3JAJ|1|5|A|319
3JAJ|1|5|C|320
3JAJ|1|5|U|321
3JAJ|1|5|C|322
3JAJ|1|5|C|323
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal protein eL13
- Chain N
- Ribosomal protein eL15
- Chain a
- Ribosomal protein uL15
- Chain i
- Ribosomal protein eL36
- Chain o
- Ribosomal protein eL42
Coloring options: