HL_3JAJ_022

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

3JAJ|1|5|C|1367, 3JAJ|1|5|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|5|U|1364
3JAJ|1|5|C|1365
3JAJ|1|5|G|1366
3JAJ|1|5|C|1367
3JAJ|1|5|A|1368
3JAJ|1|5|C|1369
3JAJ|1|5|G|1370
3JAJ|1|5|A|1371
3JAJ|1|5|A|1372
3JAJ|1|5|A|1373

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

Ribosomal protein uL4

Chain L

Ribosomal protein eL13

Chain N

Ribosomal protein eL15

Chain Y

Ribosomal protein uL24