HL_3JAJ_030

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

3JAJ|1|5|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_030 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.4311

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JAJ|1|5|C|1763
3JAJ|1|5|G|1764
3JAJ|1|5|A|1765
3JAJ|1|5|A|1766
3JAJ|1|5|A|1767
3JAJ|1|5|C|1768
3JAJ|1|5|G|1769

Current chains

Chain 5

28S ribosomal RNA

Nearby chains