HL_3JAJ_074
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 3JAJ|1|5|G|4694, 3JAJ|1|5|C|4698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAJ_074 not in the Motif Atlas
- Geometric match to HL_4WF9_062
- Geometric discrepancy: 0.2178
- The information below is about HL_4WF9_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.1
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 11
Unit IDs
3JAJ|1|5|C|4688
3JAJ|1|5|U|4689
3JAJ|1|5|G|4690
3JAJ|1|5|A|4691
3JAJ|1|5|A|4692
3JAJ|1|5|C|4693
3JAJ|1|5|G|4694
3JAJ|1|5|C|4695
3JAJ|1|5|C|4696
3JAJ|1|5|U|4697
3JAJ|1|5|C|4698
3JAJ|1|5|U|4699
3JAJ|1|5|A|4700
3JAJ|1|5|A|4701
3JAJ|1|5|G|4702
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- Ribosomal protein uL6
- Chain O
- Ribosomal protein uL13
- Chain m
- Ribosomal protein eL40
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