HL_3JAJ_102

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAGGUGAAAUUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|G|956
3JAJ|1|S2|A|957
3JAJ|1|S2|G|958
3JAJ|1|S2|G|959
3JAJ|1|S2|U|960
3JAJ|1|S2|G|961
3JAJ|1|S2|A|962
3JAJ|1|S2|A|963
3JAJ|1|S2|A|964
3JAJ|1|S2|U|965
3JAJ|1|S2|U|966
3JAJ|1|S2|C|967

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SF

Ribosomal protein uS7

Chain SO

Ribosomal protein uS11