HL_3JAJ_115

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGGUCAUAAGCUU

Length

13 nucleotides

Bulged bases

3JAJ|1|S2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|G|1656
3JAJ|1|S2|G|1657
3JAJ|1|S2|G|1658
3JAJ|1|S2|U|1659
3JAJ|1|S2|C|1660
3JAJ|1|S2|A|1661
3JAJ|1|S2|U|1662
3JAJ|1|S2|A|1663
3JAJ|1|S2|A|1664
3JAJ|1|S2|G|1665
3JAJ|1|S2|C|1666
3JAJ|1|S2|U|1667
3JAJ|1|S2|U|1668

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

Ribosomal protein uS9

Chain ST

Ribosomal protein eS19

Chain SU

Ribosomal protein uS10

Chain Sd

Ribosomal protein uS14