HL_3JAJ_116

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUGCGCCCACGG*C

Length

13 nucleotides

Bulged bases

3JAJ|1|S2|G|1764, 3JAJ|1|S2|C|1765, 3JAJ|1|S2|C|1766, 3JAJ|1|S2|C|1767, 3JAJ|1|S2|A|1768, 3JAJ|1|S2|C|1769, 3JAJ|1|S2|G|1770

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_116 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.285

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

3JAJ|1|S2|G|1760
3JAJ|1|S2|U|1761
3JAJ|1|S2|G|1771
3JAJ|1|S2|C|1772
3JAJ|1|S2|G|1764
3JAJ|1|S2|C|1765
3JAJ|1|S2|C|1766
3JAJ|1|S2|C|1767
3JAJ|1|S2|A|1768
3JAJ|1|S2|C|1769
3JAJ|1|S2|G|1770
3JAJ|1|S2|G|1771
*
3JAJ|1|S2|C|1772

Current chains

Chain S2

18S ribosomal RNA

Nearby chains