HL_3JAJ_132

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UCCCGACCCGGGGA

Length

14 nucleotides

Bulged bases

3JAJ|1|S2|A|500, 3JAJ|1|S2|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|U|495
3JAJ|1|S2|C|496
3JAJ|1|S2|C|497
3JAJ|1|S2|C|498
3JAJ|1|S2|G|499
3JAJ|1|S2|A|500
3JAJ|1|S2|C|501
3JAJ|1|S2|C|502
3JAJ|1|S2|C|503
3JAJ|1|S2|G|504
3JAJ|1|S2|G|505
3JAJ|1|S2|G|506
3JAJ|1|S2|G|507
3JAJ|1|S2|A|508

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SJ

Ribosomal protein uS4

Chain SY

Ribosomal protein eS24