HL_3JAJ_138

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGAACGCCUCUAA

Length

13 nucleotides

Bulged bases

3JAJ|1|5|G|4694, 3JAJ|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|5|U|4689
3JAJ|1|5|G|4690
3JAJ|1|5|A|4691
3JAJ|1|5|A|4692
3JAJ|1|5|C|4693
3JAJ|1|5|G|4694
3JAJ|1|5|C|4695
3JAJ|1|5|C|4696
3JAJ|1|5|U|4697
3JAJ|1|5|C|4698
3JAJ|1|5|U|4699
3JAJ|1|5|A|4700
3JAJ|1|5|A|4701

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein uL6

Chain O

Ribosomal protein uL13

Chain m

Ribosomal protein eL40