3D structure

PDB id
3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the engaged state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UCGGCCCACGG
Length
11 nucleotides
Bulged bases
3JAJ|1|S2|C|1762, 3JAJ|1|S2|G|1763, 3JAJ|1|S2|G|1764, 3JAJ|1|S2|C|1765, 3JAJ|1|S2|C|1766, 3JAJ|1|S2|C|1767, 3JAJ|1|S2|A|1768, 3JAJ|1|S2|C|1769, 3JAJ|1|S2|G|1770
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAJ|1|S2|U|1761
3JAJ|1|S2|C|1762
3JAJ|1|S2|G|1763
3JAJ|1|S2|G|1764
3JAJ|1|S2|C|1765
3JAJ|1|S2|C|1766
3JAJ|1|S2|C|1767
3JAJ|1|S2|A|1768
3JAJ|1|S2|C|1769
3JAJ|1|S2|G|1770
3JAJ|1|S2|G|1771

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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