HL_3JAM_010

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

3JAM|1|2|C|401, 3JAM|1|2|G|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61729.1

Basepair signature

cWW-tWH-tHS-tWH-R-R-R

Number of instances in this motif group

6

Unit IDs

3JAM|1|2|C|392
3JAM|1|2|C|393
3JAM|1|2|U|394
3JAM|1|2|G|395
3JAM|1|2|A|396
3JAM|1|2|G|397
3JAM|1|2|A|398
3JAM|1|2|A|399
3JAM|1|2|A|400
3JAM|1|2|C|401
3JAM|1|2|G|402
3JAM|1|2|G|403

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain G

eS6

Chain I

eS8

Chain Y

eS24