HL_3JAM_033

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

3JAM|1|2|A|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40871.1

Basepair signature

cWW-cWH-tWH-R-R-R

Number of instances in this motif group

8

Unit IDs

3JAM|1|2|A|1548
3JAM|1|2|U|1549
3JAM|1|2|U|1550
3JAM|1|2|G|1551
3JAM|1|2|U|1552
3JAM|1|2|A|1553
3JAM|1|2|A|1554
3JAM|1|2|U|1555
3JAM|1|2|U|1556
3JAM|1|2|A|1557
3JAM|1|2|U|1558
3JAM|1|2|U|1559

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain S

uS13

Chain T

eS19

Chain d

uS14