HL_3JAM_035

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GAGAUCUCGGCAACUCCAUCU*C

Length

22 nucleotides

Bulged bases

3JAM|1|2|G|1696, 3JAM|1|2|G|1697, 3JAM|1|2|C|1698, 3JAM|1|2|A|1699, 3JAM|1|2|A|1700, 3JAM|1|2|C|1701, 3JAM|1|2|U|1702, 3JAM|1|2|C|1703, 3JAM|1|2|C|1704, 3JAM|1|2|A|1705, 3JAM|1|2|U|1708

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAM|1|2|G|1688
3JAM|1|2|A|1689
3JAM|1|2|G|1690
3JAM|1|2|A|1691
3JAM|1|2|U|1706
3JAM|1|2|C|1707
3JAM|1|2|U|1708
3JAM|1|2|C|1709
3JAM|1|2|G|1696
3JAM|1|2|G|1697
3JAM|1|2|C|1698
3JAM|1|2|A|1699
3JAM|1|2|A|1700
3JAM|1|2|C|1701
3JAM|1|2|U|1702
3JAM|1|2|C|1703
3JAM|1|2|C|1704
3JAM|1|2|A|1705
3JAM|1|2|U|1706
3JAM|1|2|C|1707
3JAM|1|2|U|1708
*
3JAM|1|2|C|1709

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6