HL_3JAP_003

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

3JAP|1|1|A|59

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAP_003 not in the Motif Atlas

Homologous match to HL_3TUP_003

Geometric discrepancy: 0.2804

The information below is about HL_3TUP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

3JAP|1|1|G|53
3JAP|1|1|A|54
3JAP|1|1|U|55
3JAP|1|1|C|56
3JAP|1|1|G|57
3JAP|1|1|A|58
3JAP|1|1|A|59
3JAP|1|1|A|60
3JAP|1|1|C|61

Current chains

Chain 1

Met-tRNAi (U31:A39 variant)

Nearby chains

Chain j

eIF2 alpha