HL_3JAP_015

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CCUAAUUCAGG

Length

11 nucleotides

Bulged bases

3JAP|1|2|A|451

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|C|447
3JAP|1|2|C|448
3JAP|1|2|U|449
3JAP|1|2|A|450
3JAP|1|2|A|451
3JAP|1|2|U|452
3JAP|1|2|U|453
3JAP|1|2|C|454
3JAP|1|2|A|455
3JAP|1|2|G|456
3JAP|1|2|G|457

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain Y

eS24