HL_3JAP_017

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAP_017 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.21

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3JAP|1|2|A|519
3JAP|1|2|A|520
3JAP|1|2|U|521
3JAP|1|2|G|522
3JAP|1|2|U|523
3JAP|1|2|A|524
3JAP|1|2|A|525
3JAP|1|2|A|526
3JAP|1|2|U|527
3JAP|1|2|A|528
3JAP|1|2|C|529
3JAP|1|2|C|530
3JAP|1|2|U|531

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4

Chain Y

eS24