HL_3JAP_018

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGCAAGUCUGGUGCCAGCAGC

Length

21 nucleotides

Bulged bases

3JAP|1|2|U|557, 3JAP|1|2|C|564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|G|551
3JAP|1|2|G|552
3JAP|1|2|C|553
3JAP|1|2|A|554
3JAP|1|2|A|555
3JAP|1|2|G|556
3JAP|1|2|U|557
3JAP|1|2|C|558
3JAP|1|2|U|559
3JAP|1|2|G|560
3JAP|1|2|G|561
3JAP|1|2|U|562
3JAP|1|2|G|563
3JAP|1|2|C|564
3JAP|1|2|C|565
3JAP|1|2|A|566
3JAP|1|2|G|567
3JAP|1|2|C|568
3JAP|1|2|A|569
3JAP|1|2|G|570
3JAP|1|2|C|571

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain D

uS3

Chain J

uS4

Chain X

uS12

Chain e

eS30

Chain i

eIF1A