HL_3JAP_025

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UUUCUUAUG

Length

9 nucleotides

Bulged bases

3JAP|1|2|U|1057

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|U|1055
3JAP|1|2|U|1056
3JAP|1|2|U|1057
3JAP|1|2|C|1058
3JAP|1|2|U|1059
3JAP|1|2|U|1060
3JAP|1|2|A|1061
3JAP|1|2|U|1062
3JAP|1|2|G|1063

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain b

eS27

Chain o

eIF3a

Chain p

eIF3c